PLANT JOURNAL

Microscale magnetic microparticle-based immunopurification of cytokinins from Arabidopsis root apex.

Plačková L., Oklestkova J., Pospíšková K., Poláková K., Buček J., Stýskala J., Zatloukal M., Šafařík I., Zbořil R., Strnad M., Doležal K., Novák O.
PLANT JOURNAL 85 : 1065-1075 , 2017
Keywords: cytokinins, magnetic microparticles, immunoaffinity separation, metabolite profiling, Arabidopsis

The pangenome of hexaploid bread wheat

Montenegro, J.D., Golicz, A.A., Bayer, P.E., Hurgobin, B., Lee, H., Chan, C.-K.K., Visendi, P., Lai, K., Doležel, J., Batley, J., Edwards, D.
PLANT JOURNAL 90 : 1007-1013 , 2017
Keywords: wheat, genome, pangenome, diversity, single nucleotide polymorphisms, database, Triticum aestivum

Dissecting the U, M, S and C genomes of wild relatives of bread wheat (Aegilops spp.) into chromosomes and exploring their synteny with wheat

Molnár, I., Vrána, J., Burešová, V., Cápal, P., Farkas, A., Darkó, É., Cseh, A., Kubaláková, M., Molnár-Láng, M., Doležel, J.
PLANT JOURNAL 88 : 452-467 , 2016
Keywords: Aegilops umbellulata, Aegilops comosa, Aegilops speltoides, Aegilops markgrafii, flow cytometric chromosome sorting, fluorescence in situ hybridization, conserved orthologous set markers

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H

Aliyeva-Schnorr, L., Beier, S., Karafiátová, M., Schmutzer, T., Scholz, U., Doležel, J., Stein, N., Houben, A.
PLANT JOURNAL 84 : 385–394 , 2015
Keywords: physical map, BAC FISH, centromere, recombination, chromatin, pachytene chromosomes, posttranslational histone modifications

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5Mg of Aegilops geniculata

Tiwari, V.K., Wang, S., Danilova, T., Koo, D.H., Vrána, J., Kubaláková, M., Hřibová, E., Rawat, N., Kalia, B., Singh, N., Friebe, B., Doležel, J., Akhunov, E., Poland, J., Sabir, J.S.M., Gill, B.S.
PLANT JOURNAL 84 : 733-746 , 2015
Keywords: flow sorting, SNPs, next generation sequencing, single gene FISH, GenomeZipper, synteny

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

Muñoz-Amatriaín, M., Lonardi, S., Luo, M.-C., Madishetty, K., Svensson, J.T., Moscou, M.J., Wanamaker, S., Jiang, T., Kleinhofs, A., Muehlbauer, G.J., Wise, R.P., Stein, N., Ma, Y., Rodriguez, E., Kudrna, D., Bhat, P.R., Chao, S., Condamine, P., Heinen, S., Resnik, J., Wing, R., Witt, H.N., Alpert, M., Beccuti, M., Bozdag, S., Cordero, F., Mirebrahim, H., Ounit, R., Wu, Y., You, F., Zheng, J., Šimková, H., Doležel, J., Grimwood, J., Schmutz, J., Duma, D., Altschmied, L., Blake, T., Bregitzer, P., Cooper, L., Dilbirligi, M., Falk, A., Feiz, L., Graner, A., Gustafson, P., Hayes, P.M., Lemaux, P., Mammadov, J., Close, T.J.
PLANT JOURNAL 84 : 216-227 , 2015
Keywords: Barley, Hordeum vulgare L., BAC sequencing, gene distribution, recombination frequency, synteny, centromere BACs, HarvEST:Barley, Aegilops tauschii

Multiple displacement amplification of the DNA from single flow-sorted plant chromosome

Cápal, P., Blavet, N., Vrána, J., Kubaláková, M., Doležel, J.
PLANT JOURNAL 84 : 838-844 , 2015
Keywords: whole-genome amplification, single-chromosome genomics, next-generation sequencing, flow cytometry, chromosome sorting, sequence assembly, Triticum aestivum L. (bread wheat)

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A

Poursarebani, N., Nussbaumer, T., Šimková, H., Šafář, J., Witsenboer, H., van Oeveren, J., Doležel, J., Mayer, K.F.X., Stein, N., Schnurbusch, T.
PLANT JOURNAL 79 : 334-347 , 2014
Keywords: bread wheat chromosome 6A, whole-genome profiling, LINEAR TOPOLOGICAL CONTIGS, anchored physical map, bacterial artificial chromosome contigs, technical advance

Antagonistic roles of abscisic acid and cytokinin during response to nitrogen depletion in oleaginous microalga Nannochloropsis oceanica expand the evolutionary breadth of phytohormone function

Lu Y., Tarkowská D., Turečková V., Luo T., Xin Y, Li J, Wang Q, Jiao N., Strnad M., Xu J.
PLANT JOURNAL 80 : 52-68 , 2014
Keywords: Nannochloropsis oceanica, antagonistic synergy between abscisic acid and cytokinin, phytohormone evolution, stress response, cell cycle progression

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes

Pont, C., Murat, F., Guizard, S., Flores, R., Foucrier, S., Bidet, Y., Quraishi, U.M., Alaux, M., Doležel, J., Fahima, T., Budak, H., Keller, B., Salvi, S., Maccaferri, M., Steinbach, D., Feuillet, C., Quesneville, H., Salse, J.
PLANT JOURNAL 76 : 1030-1044 , 2013
Keywords: paleogenomics, dominance, partitioning, conserved orthologous set, single nucleotide polymorphism