PLANT JOURNAL

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda

Finke, A., Mandáková, T., Nawaz, K., Vu, G.T.H., Novák, P., Macas, J., Lysak, M.A., Pečinka, A.
PLANT JOURNAL 99 : 1066-1079 , 2019
Keywords: satellite repeats, heterochromatin, DNA methylation, comparative genomics, Brassicaceae

The genome of cowpea (Vigna unguiculata [L.] Walp.)

Lonardi, S., Muñoz-Amatriaín, M., Liang, Q., Shu, S., Wanamaker, S.I., Lo, S., Tanskanen, J., Schulman, A.H., Zhu, T., Luo, M.-Ch., Alhakami, H., Ounit, R., Hasan, A.M., Verdier, J., Roberts, P. A., Santos, J. R.P., Ndeve, A., Doležel, J., Vrána, J., Hokin, S. A., Farmer, A. D., Cannon, S. B., Close, T.J.
PLANT JOURNAL 98 : 767-782 , 2019
Keywords: chromosomal inversion, cowpea, domestication, genome annotation, genome evolution, genome size, next-generation sequencing, legumes, Phaseolus vulgaris, repetitive elements, Vigna unguiculata

Discovery of multi-megabase polymorphic inversions by chromosome conformation capture sequencing in large-genome plant species

Himmelbach, A., Ruban, A., Walde, I., Šimková, H., Doležel, J., Hastie, A., Stein, N., Mascher, M.
PLANT JOURNAL 96 : 1309-1316 , 2018
Keywords: Hordeum vulgare ; barley; chromosomal inversions; chromosome conformation capture sequencing; genomics; optical mapping; technical advance

When the BRANCHED network bears fruit: How carpic dominance causes fruit dimorphism in Aethionema

Lenser T., Tarkowská D., Novák O., Wilhelmsson P.K.I., Bennett T., Rensing S.A., Strnad M., Theißen G.
PLANT JOURNAL : , 2018
Keywords: Aethionema arabicum, auxin, BRANCHED1, carpic dominance, cytokinin, fruit dimorphism, fruit development, molecular evolution, phytohormones, shoot branching

Interplay between cytochrome c and gibberellins during Arabidopsis vegetative development

Racca S., Welchen E., Gras D.E., Tarkowská D., Turečková V., Maurino V.G., Gonzalez D.H.
PLANT JOURNAL : , 2018
Keywords: cytochrome c, gibberellin, DELLA protein, mitochondrion, Arabidopsis thaliana

Microscale magnetic microparticle-based immunopurification of cytokinins from Arabidopsis root apex.

Plačková L., Oklestkova J., Pospíšková K., Poláková K., Buček J., Stýskala J., Zatloukal M., Šafařík I., Zbořil R., Strnad M., Doležal K., Novák O.
PLANT JOURNAL 85 : 1065-1075 , 2017
Keywords: cytokinins, magnetic microparticles, immunoaffinity separation, metabolite profiling, Arabidopsis

The pangenome of hexaploid bread wheat

Montenegro, J.D., Golicz, A.A., Bayer, P.E., Hurgobin, B., Lee, H., Chan, C.-K.K., Visendi, P., Lai, K., Doležel, J., Batley, J., Edwards, D.
PLANT JOURNAL 90 : 1007-1013 , 2017
Keywords: wheat, genome, pangenome, diversity, single nucleotide polymorphisms, database, Triticum aestivum

Dissecting the U, M, S and C genomes of wild relatives of bread wheat (Aegilops spp.) into chromosomes and exploring their synteny with wheat

Molnár, I., Vrána, J., Burešová, V., Cápal, P., Farkas, A., Darkó, É., Cseh, A., Kubaláková, M., Molnár-Láng, M., Doležel, J.
PLANT JOURNAL 88 : 452-467 , 2016
Keywords: Aegilops umbellulata, Aegilops comosa, Aegilops speltoides, Aegilops markgrafii, flow cytometric chromosome sorting, fluorescence in situ hybridization, conserved orthologous set markers

Cytogenetic mapping with centromeric bacterial artificial chromosomes contigs shows that this recombination-poor region comprises more than half of barley chromosome 3H

Aliyeva-Schnorr, L., Beier, S., Karafiátová, M., Schmutzer, T., Scholz, U., Doležel, J., Stein, N., Houben, A.
PLANT JOURNAL 84 : 385–394 , 2015
Keywords: physical map, BAC FISH, centromere, recombination, chromatin, pachytene chromosomes, posttranslational histone modifications

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5Mg of Aegilops geniculata

Tiwari, V.K., Wang, S., Danilova, T., Koo, D.H., Vrána, J., Kubaláková, M., Hřibová, E., Rawat, N., Kalia, B., Singh, N., Friebe, B., Doležel, J., Akhunov, E., Poland, J., Sabir, J.S.M., Gill, B.S.
PLANT JOURNAL 84 : 733-746 , 2015
Keywords: flow sorting, SNPs, next generation sequencing, single gene FISH, GenomeZipper, synteny