Jana Čížková's picture

Mgr. Jana Čížková, Ph.D.

Email: cizkova@ueb.cas.cz
Tel.: +420 585 238 717

Address:
Šlechtitelů 31, 783 71, Olomouc - Holice, Česká republika
Room number: 213

Profile

Jana Čížková EN

Position: 
postdoc
Publications: 
Number of publications: 16

2018

  • Puterova, J., Kubat, Z., Kejnovsky, E., Jesionek, W., Čížková, J., Vyskot, B., Hobza, R.
    BMC GENOMICS 19 153 2018 Fulltext: PDF link on intranet only
  • Said M., Hřibová E., Danilova T.D., Karafiátová M., Čížková J., Friebe B., Doležel J., Gill B.S., Vrána J.
    THEORETICAL AND APPLIED GENETICS 2018 Fulltext: public PDF link (External fulltext)
  • International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators: Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N.; IWGSC whole-genome assembly principal investigators: Pozniak, C.J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A.G.; Whole-genome sequencing and assembly: Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnère, G., Mascher, M., Sharpe, A.G., Ben-Zvi, G., Josselin, A.A.; Hi-C data-based scaffolding: Stein, N., Mascher, M., Himmelbach, A.; Whole-genome assembly quality control and analyses: Choulet, F., Keeble-Gagnère, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.A., Koh, C., Muehlbauer, G., Pasam, R.K., Paux, E., Pozniak, C.J., Rigault, P., Sharpe, A.G., Tibbits, J., Tiwari, V.; Pseudomolecule assembly: Choulet, F., Keeble-Gagnère, G., Mascher, M., Josselin, A.A., Rogers, J.; RefSeq genome structure and gene analyses: Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnère, G., Mayer, K.F.X., Ormanbekova, D., Paux, E., Prade, V., Šimková, H., Wicker, T.; Automated annotation: Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K.F.X., Twardziok, S., Venturini, L.; Manual gene curation: Appels, R., Rimbert, H., Choulet, F., Juhász, A., Keeble-Gagnère, G.; Subgenome comparative analyses: Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnère, G., Mayer, K.F.X., Wicker, T.; Transposable elements: Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M.; Phylogenomic analyses: Lang, D., Spannagl, M., Appels, R., Fischer, I.; Transcriptome analyses and RNA-seq data: Uauy, C., Borrill, P., Ramirez-Gonzalez, R.H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M.W., Hayden, M., Jacobs, J., Lang, D., Robinson, S.J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B.B.H.; Whole-genome methylome: Pozniak, C.J., Robinson, S.J., Sharpe, A.G., Cory, A.; Histone mark analyses: Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D.; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags: Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartoš, J., Bellec, A., Berges, H., Doležel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.A., Šimková, H., Singh, K., Valárik, M., van der Vossen, E., Vautrin, S., Weining, S.; Chromosome LTC mapping and physical mapping quality control: Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J.; RH mapping: Tiwari, V., Gill, B., Paux, E., Poland, J.; Optical mapping: Doležel, J., Číhalíková, J., Šimková, H., Toegelová, H., Vrána, J.; Recombination analyses: Sourdille, P., Darrier, B.; Gene family analyses: Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V.; CBF gene family: Barabaschi, D., Cattivelli, L.; Dehydrin gene family: Hernandez, P., Galvez, S., Budak, H.; NLR gene family: Steuernagel, B., Jones, J.D.G., Witek, K., Wulff, B.B.H., Yu, G.; PPR gene family: Small, I., Melonek, J., Zhou, R.; Prolamin gene family: Juhász, A., Belova, T., Appels, R., Olsen, O.A.; WAK gene family: Kanyuka, K., King, R.; Stem solidness (SSt1) QTL team: Nilsen, K., Walkowiak, S., Pozniak, C.J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D.; Flowering locus C (FLC) gene team: Rohde, A., Golds, T.; Genome size analysis: Doležel, J., Čížková, J., Tibbits, J.; MicroRNA and tRNA annotation: Budak, H., Akpinar, B.A., Biyiklioglu, S.; Genetic maps and mapping: Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., N'Daiye, A.; BAC libraries and chromosome sorting: Doležel, J., Šimková, H., Číhalíková, J., Kubaláková, M., Šafář, J., Vrána, J.; BAC pooling, BAC library repository, and access: Berges, H., Bellec, A., Vautrin, S.; IWGSC sequence and data repository and access: Alaux, M., Alfama, F., Adam-Blondon, A.F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H.; Physical maps and BAC-based sequences: 1A BAC sequencing and assembly: Pozniak, C.J., Sharpe, A.G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T.; 1B BAC sequencing and assembly: Choulet, F., Paux, E., Alberti, A., Aury, J.M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P.; 1D, 4D, and 6D physical mapping: Gill, B., Kaur, G., Luo, M., Sehgal, S.; 2AL physical mapping: Singh, K., Chhuneja, P., Gupta, O.P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B.; 2AS physical mapping: Singh, N.K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R.S.; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps: Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Doležel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S.; 3AL physical mapping: Gill, B., Kaur, G., Luo, M., Sehgal, S.; 3DS physical mapping and BAC sequencing and assembly: Bartoš, J., Holušová, K., Plíhal, O.; 3DL BAC sequencing and assembly: Clark, M.D., Heavens, D., Kettleborough, G., Wright, J.; 4A physical mapping, BAC sequencing, assembly, and annotation: Valárik, M., Abrouk, M., Balcárková, B., Holušová, K., Hu, Y., Luo, M.; 5BS BAC sequencing and assembly: Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E.; 6B BAC sequencing and assembly: Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J.; 7A physical mapping and BAC sequencing: Appels, R., Hayden, M., Keeble-Gagnère, G., Rigault, P., Tibbits, J.; 7B physical mapping, BAC sequencing, and assembly: Olsen, O.A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K.F.X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B.; 7DS BAC sequencing and assembly: Šimková, H., Abrouk, M., Batley, J., Bayer, P.E., Edwards, D., Hayashi, S., Toegelová, H., Tulpová, Z., Visendi, P.; 7DL physical mapping and BAC sequencing: Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L.; Figures: Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R.H., Spannagl, M., Stein, N., Uauy, C., Venturini, L.; Manuscript writing team: Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C.J., Ramirez-Gonzalez, R.H., Šimková, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
    SCIENCE 361 7191 2018 Fulltext: PDF link on intranet only

2017

2016

  • Sutanto, A., Edison, H.S., Riska, Nasution, F., Hermanto, C., Čížková, J., Hřibová, E., Doležel, J., Roux, N., Horry, J.-P., Daniells, J.W., De Langhe, E.
    ACTA HORTICULTURAE 1114 19-25 2016 Fulltext: PDF link on intranet only
  • Vrána, J., Cápal, P., Šimková, H., Karafiátová, M., Čížková, J., Doležel, J.
    CURRENT PROTEINS AND PEPTIDE SCIENCE 78 5.3.1-5.3.43 2016 Fulltext: PDF link on intranet only

2015