Seznam publikací

2018

  • Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome
    Keeble-Gagnère, G., Rigault, P., Tibbits, J., Pasam, R., Hayden, M., Forrest, K., Frenkel, Z., Korol, A., Huang, B.E., Cavanagh, C., Taylor, J., Abrouk, M., Sharpe, A., Konkin, D., Sourdille, P., Darrier, B., Choulet, F., Bernard, A., Rochfort, S., Dimech, A., Watson-Haigh, N., Baumann, U., Eckermann, P., Fleury, D., Juhasz, A., Boisvert, S., Nolin, M.A., Doležel, J., Šimková, H., Toegelová, H., Šafář, J., Luo, M.C., Câmara, F., Pfeifer, M., Isdale, D., Nyström-Persson, J., IWGSC, Koo, D.H., Tinning, M., Cui, D., Ru, Z., Appels, R.
    GENOME BIOLOGY 19 112 2018
  • Picolyl amides of betulinic acid as antitumor agents causing tumor cell apoptosis
    Bildziukevich U., Rárová L., Šaman D., Wimmer Z.
    EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY 145 41-50 2018
  • Plant adaptogens: Natural Medicaments for 21st century
    Özdemir Z., Bildziukevich U., Wimmerová M., Macůrková A., Lovecká P., Wimmer Z.
    3 2196-2214 2018
  • Plant Hormonomics: Multiple Phytohormone Profiling by Targeted Metabolomics
    Šimura J., Antoniadi I., Široká J., Tarkowská D., Strnad M., Karin Ljung, Novák O.
    PLANT PHYSIOLOGY 177 476-489 2018
  • Plastidial phosphoglucose isomerase is an important determinant of seed yield through involvement in gibberellin-mediated reproductive development and biosynthesis of storage reserves in Arabidopsis
    Bahaji A., Almagro G., Ezquer I., Gámez-Arcas S., Sánchez-López A.M., Muñoz F.J., José Barrio R., Sampedro M.C., De Diego N., Spíchal L., Doležal K., Tarkowská D., Caporali E., Mendes M.A., Baroja-Fernández E., Pozueta-Romero J.
    PLANT CELL 2018
  • Pm21 from Haynaldia villosa encodes a CC-NBS-LRR protein conferring powdery mildew resistance in wheat
    Xing, L., Hu, P., Liu, J., Witek, K., Zhou, S., Xu, J., Zhou, W., Gao, L., Huang, Z., Zhang, R., Wang, X., Chen, P., Wang, H., Jones, J.D.G., Karafiátová, M., Vrána, J., Bartoš, J., Doležel, J., Tian, Y., Wu, Y., Cao, A.
    MOLECULAR PLANT 11 874-878 2018
  • Profiles of endogenous phytohormones over the course of Norway spruce somatic embryogenesis
    Vondráková Z., Dobrev P.I., Pešek P., Fischerová L., Vágner M., Motyka V.
    FRONTIERS IN PLANT SCIENCE 9, Article 1283 1-13 2018
  • Repetitive somatic embryogenesis induced cytological and proteomic changes in embryogenic lines of Pseudotsuga menziesii [Mirb.]
    Gautier F., Eliášová K., Leplé J.-C., Vondráková Z., Lomenech A.-M., Le Metté C., Label P., Costa G., Trontin J.-F., Teyssier C., Lelu-Walter M.-A.
    BMC PLANT BIOLOGY 18 164 2018
  • Resorcinol-Type Strigolactone Mimics as Potent Germinators of the Parasitic Plants Striga hermonthica and Phelipanche ramosa
    Dvořáková M., Hylová A., Soudek P., Retzer K., Spichal L., Vaněk T.
    JOURNAL OF NATURAL PRODUCTS 81(11) 2321-2328 2018
  • Rht18 semidwarfism in wheat is due to increased GA 2-oxidaseA9 expression and reduced GA content
    Ford, B.A., Foo, E., Sharwood, R., Karafiátová, M., Vrána, J., MacMillan, C., Nichols, D.S., Steuernagel, B., Uauy, C., Doležel, J., Chandler, P.M., Spielmeyer, W.
    PLANT PHYSIOLOGY 177 168-180 2018
  • Round-shape gold nanoparticles: effect of particle size and concentration on Arabidopsis thaliana root growth
    Siegel J., Záruba K., Švorčík V., Kroumanová K., Burketová L., Martinec J..
    NANOSCALE RESEARCH LETTERS 13 (1) 95 2018
  • Scaffolding for repair: Understanding molecular functions of the SMC5/6 complex
    Diaz, M., Pečinka, A.
    GENES 9 36 2018
  • Sequence divergence between spelt and common wheat
    Liu, M., Zhao, Q., Qi, F., Stiller, J., Tang, S., Miao, J., Vrána, J., Holušová, K., Liu, D., Doležel, J., Manners, J.M., Han, B., Liu, C.
    THEORETICAL AND APPLIED GENETICS 131 1125-1132 2018
  • Shifting the limits in wheat research and breeding using a fully annotated reference genome
    International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators: Appels, R., Eversole, K., Feuillet, C., Keller, B., Rogers, J., Stein, N.; IWGSC whole-genome assembly principal investigators: Pozniak, C.J., Stein, N., Choulet, F., Distelfeld, A., Eversole, K., Poland, J., Rogers, J., Ronen, G., Sharpe, A.G.; Whole-genome sequencing and assembly: Pozniak, C., Ronen, G., Stein, N., Barad, O., Baruch, K., Choulet, F., Keeble-Gagnère, G., Mascher, M., Sharpe, A.G., Ben-Zvi, G., Josselin, A.A.; Hi-C data-based scaffolding: Stein, N., Mascher, M., Himmelbach, A.; Whole-genome assembly quality control and analyses: Choulet, F., Keeble-Gagnère, G., Mascher, M., Rogers, J., Balfourier, F., Gutierrez-Gonzalez, J., Hayden, M., Josselin, A.A., Koh, C., Muehlbauer, G., Pasam, R.K., Paux, E., Pozniak, C.J., Rigault, P., Sharpe, A.G., Tibbits, J., Tiwari, V.; Pseudomolecule assembly: Choulet, F., Keeble-Gagnère, G., Mascher, M., Josselin, A.A., Rogers, J.; RefSeq genome structure and gene analyses: Spannagl, M., Choulet, F., Lang, D., Gundlach, H., Haberer, G., Keeble-Gagnère, G., Mayer, K.F.X., Ormanbekova, D., Paux, E., Prade, V., Šimková, H., Wicker, T.; Automated annotation: Choulet, F., Spannagl, M., Swarbreck, D., Rimbert, H., Felder, M., Guilhot, N., Gundlach, H., Haberer, G., Kaithakottil, G., Keilwagen, J., Lang, D., Leroy, P., Lux, T., Mayer, K.F.X., Twardziok, S., Venturini, L.; Manual gene curation: Appels, R., Rimbert, H., Choulet, F., Juhász, A., Keeble-Gagnère, G.; Subgenome comparative analyses: Choulet, F., Spannagl, M., Lang, D., Abrouk, M., Haberer, G., Keeble-Gagnère, G., Mayer, K.F.X., Wicker, T.; Transposable elements: Choulet, F., Wicker, T., Gundlach, H., Lang, D., Spannagl, M.; Phylogenomic analyses: Lang, D., Spannagl, M., Appels, R., Fischer, I.; Transcriptome analyses and RNA-seq data: Uauy, C., Borrill, P., Ramirez-Gonzalez, R.H., Appels, R., Arnaud, D., Chalabi, S., Chalhoub, B., Choulet, F., Cory, A., Datla, R., Davey, M.W., Hayden, M., Jacobs, J., Lang, D., Robinson, S.J., Spannagl, M., Steuernagel, B., Tibbits, J., Tiwari, V., van Ex, F., Wulff, B.B.H.; Whole-genome methylome: Pozniak, C.J., Robinson, S.J., Sharpe, A.G., Cory, A.; Histone mark analyses: Benhamed, M., Paux, E., Bendahmane, A., Concia, L., Latrasse, D.; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags: Rogers, J., Jacobs, J., Alaux, M., Appels, R., Bartoš, J., Bellec, A., Berges, H., Doležel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., Letellier, T., Olsen, O.A., Šimková, H., Singh, K., Valárik, M., van der Vossen, E., Vautrin, S., Weining, S.; Chromosome LTC mapping and physical mapping quality control: Korol, A., Frenkel, Z., Fahima, T., Glikson, V., Raats, D., Rogers, J.; RH mapping: Tiwari, V., Gill, B., Paux, E., Poland, J.; Optical mapping: Doležel, J., Číhalíková, J., Šimková, H., Toegelová, H., Vrána, J.; Recombination analyses: Sourdille, P., Darrier, B.; Gene family analyses: Appels, R., Spannagl, M., Lang, D., Fischer, I., Ormanbekova, D., Prade, V.; CBF gene family: Barabaschi, D., Cattivelli, L.; Dehydrin gene family: Hernandez, P., Galvez, S., Budak, H.; NLR gene family: Steuernagel, B., Jones, J.D.G., Witek, K., Wulff, B.B.H., Yu, G.; PPR gene family: Small, I., Melonek, J., Zhou, R.; Prolamin gene family: Juhász, A., Belova, T., Appels, R., Olsen, O.A.; WAK gene family: Kanyuka, K., King, R.; Stem solidness (SSt1) QTL team: Nilsen, K., Walkowiak, S., Pozniak, C.J., Cuthbert, R., Datla, R., Knox, R., Wiebe, K., Xiang, D.; Flowering locus C (FLC) gene team: Rohde, A., Golds, T.; Genome size analysis: Doležel, J., Čížková, J., Tibbits, J.; MicroRNA and tRNA annotation: Budak, H., Akpinar, B.A., Biyiklioglu, S.; Genetic maps and mapping: Muehlbauer, G., Poland, J., Gao, L., Gutierrez-Gonzalez, J., N'Daiye, A.; BAC libraries and chromosome sorting: Doležel, J., Šimková, H., Číhalíková, J., Kubaláková, M., Šafář, J., Vrána, J.; BAC pooling, BAC library repository, and access: Berges, H., Bellec, A., Vautrin, S.; IWGSC sequence and data repository and access: Alaux, M., Alfama, F., Adam-Blondon, A.F., Flores, R., Guerche, C., Letellier, T., Loaec, M., Quesneville, H.; Physical maps and BAC-based sequences: 1A BAC sequencing and assembly: Pozniak, C.J., Sharpe, A.G., Walkowiak, S., Budak, H., Condie, J., Ens, J., Koh, C., Maclachlan, R., Tan, Y., Wicker, T.; 1B BAC sequencing and assembly: Choulet, F., Paux, E., Alberti, A., Aury, J.M., Balfourier, F., Barbe, V., Couloux, A., Cruaud, C., Labadie, K., Mangenot, S., Wincker, P.; 1D, 4D, and 6D physical mapping: Gill, B., Kaur, G., Luo, M., Sehgal, S.; 2AL physical mapping: Singh, K., Chhuneja, P., Gupta, O.P., Jindal, S., Kaur, P., Malik, P., Sharma, P., Yadav, B.; 2AS physical mapping: Singh, N.K., Khurana, J., Chaudhary, C., Khurana, P., Kumar, V., Mahato, A., Mathur, S., Sevanthi, A., Sharma, N., Tomar, R.S.; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps: Rogers, J., Jacobs, J., Alaux, M., Bellec, A., Berges, H., Doležel, J., Feuillet, C., Frenkel, Z., Gill, B., Korol, A., van der Vossen, E., Vautrin, S.; 3AL physical mapping: Gill, B., Kaur, G., Luo, M., Sehgal, S.; 3DS physical mapping and BAC sequencing and assembly: Bartoš, J., Holušová, K., Plíhal, O.; 3DL BAC sequencing and assembly: Clark, M.D., Heavens, D., Kettleborough, G., Wright, J.; 4A physical mapping, BAC sequencing, assembly, and annotation: Valárik, M., Abrouk, M., Balcárková, B., Holušová, K., Hu, Y., Luo, M.; 5BS BAC sequencing and assembly: Salina, E., Ravin, N., Skryabin, K., Beletsky, A., Kadnikov, V., Mardanov, A., Nesterov, M., Rakitin, A., Sergeeva, E.; 6B BAC sequencing and assembly: Handa, H., Kanamori, H., Katagiri, S., Kobayashi, F., Nasuda, S., Tanaka, T., Wu, J.; 7A physical mapping and BAC sequencing: Appels, R., Hayden, M., Keeble-Gagnère, G., Rigault, P., Tibbits, J.; 7B physical mapping, BAC sequencing, and assembly: Olsen, O.A., Belova, T., Cattonaro, F., Jiumeng, M., Kugler, K., Mayer, K.F.X., Pfeifer, M., Sandve, S., Xun, X., Zhan, B.; 7DS BAC sequencing and assembly: Šimková, H., Abrouk, M., Batley, J., Bayer, P.E., Edwards, D., Hayashi, S., Toegelová, H., Tulpová, Z., Visendi, P.; 7DL physical mapping and BAC sequencing: Weining, S., Cui, L., Du, X., Feng, K., Nie, X., Tong, W., Wang, L.; Figures: Borrill, P., Gundlach, H., Galvez, S., Kaithakottil, G., Lang, D., Lux, T., Mascher, M., Ormanbekova, D., Prade, V., Ramirez-Gonzalez, R.H., Spannagl, M., Stein, N., Uauy, C., Venturini, L.; Manuscript writing team: Stein, N., Appels, R., Eversole, K., Rogers, J., Borrill, P., Cattivelli, L., Choulet, F., Hernandez, P., Kanyuka, K., Lang, D., Mascher, M., Nilsen, K., Paux, E., Pozniak, C.J., Ramirez-Gonzalez, R.H., Šimková, H., Small, I., Spannagl, M., Swarbreck, D., Uauy, C.
    SCIENCE 361 7191 2018
  • Silver ions increase plasma membrane permeability through modulation of intracellular calcium levels in tobacco BY-2 cells
    Klíma P., Laňková M., Vandenbussche F., Van Der Straeten D., Petrášek J.
    PROTOPLASMA 37(5) 809-818 2018
  • Synthesis and characterization of isotopically-labeled silver, copper and zinc oxide nanoparticles for tracing studies in plants
    Nath J., Dror I., Landa P., Vaněk T., Kaplan-Ashiri I., Berkowitz B.
    ENVIRONMENTAL POLLUTION 242 1827-1837 2018
  • Tetraploid Festuca apennina is prone to produce triploid hybrid progeny when crossed with diploid Festuca pratensis
    Boller, B., Felder, T., Kopecký, D.
    Breeding grasses and protein crops in the era of genomics 33-38 2018
  • The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and wheat single-gene probes
    Said, M., Hřibová, E., Danilova, T.V., Karafiátová, M., Čížková, J., Friebe, B., Doležel, J., Gill, B.S., Vrána, J.
    THEORETICAL AND APPLIED GENETICS 131 2213-2227 2018
  • The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
    Filiault, D.L., Ballerini, E.S., Mandáková, T., Aköz, G., Derieg, N.J., Schmutz, J., Jenkins, J., Grimwood, J., Shu, S., Hayes, R.D., Hellsten, U., Barry, K., Yan, J., Mihaltcheva, S., Karafiátová, M., Nizhynska, V., Kramer, E.M., Lysak, M.A., Hodges, S.A., Nordborg, M.
    ECOLOGICAL QUESTIONS 7 e36426 2018
  • The Arabidopsis thaliana non-specific phospholipase C2 is involved in the response to Pseudomonas syringae attack
    Krčková Z., Kocourková D., Daněk M., Brouzdová J., Pejchar P., Janda M., Pokotylo I., Ott P.G., Valentová O., Martinec J.
    ANNALS OF BOTANY 121 297-310 2018